PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0586s0180.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 560aa    MW: 62118 Da    PI: 4.42
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0586s0180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.23e-27201422128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWka 85 
                               Gf+F+P+ eel ++yL +k++g+ ++    +++v+++++ePwdLp k  ++ + +  wyfF++rd k   gk ++r+tk+g Wk 
  SapurV1A.0586s0180.2.p  20 EYGFKFQPSVEELFSKYLVPKTRGDIMKG-FPMEDVNLCEHEPWDLPgKsIINVDGQvAWYFFCPRDLK---GKLQRRKTKAGNWKP 102
                             57************************999.56***************644334444459*******996...6789999******** PP

                     NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             t ++k++l++ +g+++g+ +tL fy+     +++t W++ e+ l
  SapurV1A.0586s0180.2.p 103 TSNTKSILAEgTGNEIGVMRTLRFYE----GAVRTGWMIYEFDL 142
                             ********9978889**********5....456899*****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-319159IPR003441NAC domain
PROSITE profilePS5100534.66619162IPR003441NAC domain
PfamPF023652.7E-1721142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MENDLLSVMA NPIALLLLME YGFKFQPSVE ELFSKYLVPK TRGDIMKGFP MEDVNLCEHE  60
PWDLPGKSII NVDGQVAWYF FCPRDLKGKL QRRKTKAGNW KPTSNTKSIL AEGTGNEIGV  120
MRTLRFYEGA VRTGWMIYEF DLISEPSQFQ KGQYVLCKLE SDSEGVKSKK RKRSHRIAPV  180
SRSEVEPSQS MDSDSQNINP SEMAVNSPCD ESGLSHHVGL QFGNQNSGEL MNSSARQFSE  240
FSHHRTSEFR NQIPDNPMSD LVHDGSGSSH STVFNRENQY WNQPTVDSAY NGSESPCMAF  300
YSETQTPNEL PAVDSAYNVT RNPGMAFDLA NQNPNVLAAD SASNFVSESR HMTFDLANQT  360
PSVLLTADNS ASNVSGSHYM AFDLANKNLC NSISILASEN SLMASRGSEI LEPPFPFPLE  420
GESGNSMVMP CSFINQSTYD KSEPSSLIPF DFDYQNPSKE IDISAFDEGV WSNITATPPD  480
FVIQNPCKKP DMSAALEEVY SSYSEPSFSY SYLADLSLPE VSPGQAEMEG CFEQENIPNP  540
AHFQLPACME ENHSFMGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D4e-172215923165NAC domain-containing protein 19
3swp_C4e-172215923165NAC domain-containing protein 19
3swp_B4e-172215923165NAC domain-containing protein 19
3swp_A4e-172215923165NAC domain-containing protein 19
3swm_D4e-172215923165NAC domain-containing protein 19
3swm_C4e-172215923165NAC domain-containing protein 19
3swm_B4e-172215923165NAC domain-containing protein 19
3swm_A4e-172215923165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173KKRKRS
2169174KRKRSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035214.10.0PREDICTED: NAC domain-containing protein 45-like isoform X2
TrEMBLB9IC630.0B9IC63_POPTR; Uncharacterized protein
TrEMBLB9IC660.0B9IC66_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07200.10.0(Populus trichocarpa)
STRINGPOPTR_0014s07220.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-25NAC 014